Pathway

Use pathway commands to move from pathway names/IDs to genes, events, enrichment, and drug pivots.

Search pathways

biomcp search pathway -q "MAPK signaling" --limit 5

Get pathway records

biomcp get pathway R-HSA-5673001

Request pathway sections

Genes:

biomcp get pathway R-HSA-5673001 genes

Contained events:

biomcp get pathway R-HSA-5673001 events

Gene-set enrichment:

biomcp get pathway R-HSA-5673001 enrichment

Helper commands

biomcp pathway drugs R-HSA-5673001 --limit 5
biomcp pathway articles R-HSA-5673001
biomcp pathway trials R-HSA-5673001

JSON mode

biomcp --json get pathway R-HSA-5673001 genes

Related guides

• Gene
• Drug