Skip to content

BioMCP

Stacked Bar

genomoncology/biomcp

Stacked Bar Chart¶

Stacked bar charts split each mutation-defined group into mutated and not-mutated sample counts.

Supported Commands¶

study compare --type mutations --chart stacked-bar

Examples¶

biomcp study compare --study brca_tcga_pan_can_atlas_2018 \
  --gene TP53 --type mutations --target PIK3CA \
  --chart stacked-bar --terminal

biomcp study compare --study brca_tcga_pan_can_atlas_2018 \
  --gene TP53 --type mutations --target PIK3CA \
  --chart stacked-bar -o pik3ca-by-tp53-stacked.svg

Notes¶

--chart stacked-bar shows sample counts. --chart bar on the same command continues to show mutation rate by group.