Phenotype¶
Use phenotype commands to search HPO terms and phenotype-gene associations from the Monarch Initiative.
Search phenotypes¶
By HPO identifiers (space-separated):
By name or keyword:
Multiple terms with limit:
Search filters¶
| Flag | Description |
|---|---|
terms |
Positional: HPO IDs or keywords (space/comma separated) |
-l/--limit |
Max results |
--offset |
Pagination offset |
Phenotype is search-only. There is no get subcommand.
JSON mode¶
Practical tips¶
- Use HPO IDs for precise lookups when you know the exact term.
- Use plain-text keywords for exploratory searches across phenotype names.
- Combine multiple HPO IDs in a single query to retrieve a phenotype set.