Pathway
Use pathway commands to move from pathway names/IDs to genes, events, enrichment, and drug pivots.
Search pathways
biomcp search pathway -q "MAPK signaling" --limit 5
Get pathway records
biomcp get pathway R-HSA-5673001
Request pathway sections
Genes:
biomcp get pathway R-HSA-5673001 genes
Contained events:
biomcp get pathway R-HSA-5673001 events
Gene-set enrichment:
biomcp get pathway R-HSA-5673001 enrichment
Helper command
biomcp pathway drugs R-HSA-5673001 --limit 5
JSON mode
biomcp --json get pathway R-HSA-5673001 genes